代表作
1. 杨群峰，邓明华，表示张量积与量子对称，数学进展，24：532-539, 1995.
2. Minghua Deng, Minping Qian, Segmentation of Connected Image Based on Phase-locking. Communications in Nonlinear Science & Numerical Simulation. Vol.1, No.3, pp.32-36, 1996.
3. Qian, M.P. and Deng, M. The Exploratory Statistics and Neural Networks. Proc. 3rd Asia Statistics Conference, 1998.
4. 邓明华，钱敏平，基于隐马氏模型(HMM)的手写体汉字识别方法及其实现。第三届中国计算机智能接口与智能应用学术会议论文集，204-208, 1997.
5. 朱学庆，钱敏平，邓明华，数据融合在手写体汉字识别中的应用。第四届中国计算机智能接口与智能应用学术会议论文集，23-27, 1998.
6. Feng Qi, Minghua Deng, Minping Qian, Xueqing Zhu. A Novel Algorithm for Handwritten Chinese Character Recognition. Proceedings of Third International Conference:Advances in Multimodal Interfaces (ICMI 2000), Beijing, China, October 2000, 379-385.
7. Deng, M., Mehta, S., Sun, F. and Chen, T. Inferring domain-domain interactions from protein-protein interactions. Genome Research 12: 1540-1548, 2002. See also The ACM-SIGACT 6th Annual International Conference on Computational Molecular Biology (RECOMB02), 95-103, 2002.
8. Zhang, K., Deng, M., Chen, T., Waterman, M.S. and Sun, F. A dynamic programming approach for haplotype partitioning. The Proceeding of National Academy of Sciences (PNAS), 99(11): 7335-9, May 28 2002.
9. Deng, M., Sun, F. and Chen, T. Assessment of the reliability of protein-protein interactions and protein function prediction. Pacific Symposium on Biocomputing(PSB2003). 140-151, 2003.
10. Deng, M., Zhang, K., Mehta, S., Chen, T. and Sun F. Prediction of protein function using protein-protein interaction data. Journal of Computational Biology 10: 947-960, 2003. See also Proceeding of IEEE Computer Society Bioinformatics Conference (ISCB2002), 197-206, 2002.
11. Lanckriet,G.R.G, Deng, M., Cristianini, N. Jordan, M.I. and Noble, W.S. Kernel-based data fusion and its application to protein function prediction in yeast. Pac. Symp. Biocomputing(PSB2004), 300-311, 2004.
12. Deng, M., Tu, Z., Chen, T. and Sun, F. Mapping Gene Ontology to proteins based on protein-protein interaction data, Bioinformatics, 20: 895-902, 2004.
13. Deng, M., Chen, T. and Sun F. An integrative analysis of protein function prediction. Journal of Computational Biology 11: 463-475, 2004. See also The ACM-SIGACT 7th Annual International Conference on Computational Molecular Biology (RECOMB03), 95-103, 2003.
14. Feng Xiucheng, Qian Minping, Deng Minghua, Ma Xiaotu, Yan Xiting. Application of hidden semi-Markov model to 3-prime splice sites identification. Progress in Biochemistry and Biophysics, 31(5), 455-458, 2004.
15. Xiting Yan, Minghua Deng, Wing K. Fung, Minping Qian. Detecting differentially expressed genes by relative entropy. Journal of Theoretical Biology 234: 395-402, 2005
16. 马尽文，邓明华。生物医学信息处理－DNA微阵列数据在医学中的应用。物理 34(5): 371-380, 2005
17. Huan Yu, Minping Qian and Minghua Deng. Understanding protein-protein interactions: from domain level to motif Level. Proceeding of Sino-Germany conference: Network, from biology to theory 247-263, 2005.
18. Xiucheng Feng, Lin Wan, Minghua Deng, Fengzhu Sun and Minping Qian. An efficient algorithm for deciphering regulatory motifs. Proceeding of Sino-Germany conference: Network, from biology to theory 265-285, 2005.
19. Huan Yu and Minghua Deng. ClustalY: Speed up the guide tree building for ClustalW. Proceeding of Eighth international conference on high-performance computing in Asia-Pacific region. 608-610. Nov.30-Dec.3, 2005. Beijing.
20. Lee H, Tu Z, Deng M, Sun F and Chen T. Diffusion kernel based logistic regression models for protein function prediction. OMICS: Integrative Biology.10(1):40-55, 2006.
21. Lee H, Deng M, Sun F and Chen T. Inferring domain-domain interactions from multiple biological data sources. BMC Bioinformatics.25;7(1):269, 2006.
22. Yuping Zhang, Minping Qian, Qi Ouyang, Minghua Deng, Fangting Liand Chao Tang. Stochastic model of yeast cell-cycle network. Physica D 219:35-39, 2006.
23. Huan Yu, Minping Qian and Minghua Deng. Using a stochastic Adaboost algorithm to discover interactome motif pairs from sequence. Computational Intelligence and Bioinformatics.International Conference on Intelligent Computing, ICIC 2006, Kunming, China, August 16-19, 2006. Proceedings, Part III.622-630, 2006.
24. Yuping Zhang, Huan Yu, Minghua Deng and Minping Qian. Nonequilibrium Model for Yeast Cell Cycle. Computational Intelligence and Bioinformatics. International Conference on Intelligent Computing, ICIC 2006, Kunming, China, August 16-19, 2006. Proceedings, Part III, 786-791, 2006.
25. 杨良怀, 吕丕明, 陈立军，邓明华。k-gram方法识别MicroRNA前体。生物化学和生物物理进展 34(2): 154-161, 2007.
26. 谈效俊, 张永新, 钱敏平, 张幼怡,邓明华. 芯片数据标准化方法比较. 生物化学与生物物理进展 34(6):625-633,2007.
27. Lourdes Pena-Castillo, Murat Tasan, Chad L Myers, Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kyu Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Ning Lin, Gabriel F Berriz, Francis D Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David P Hill, DavidWarde-Farley, Chris Grouios, Debajyoti Ray, Judith A Blake, Minghua Deng, Michael I Jordan, William S Noble, Quaid Morris, Judith Klein-Seetharaman, Ziv Bar-Joseph, Ting Chen, Fengzhu Sun, Olga G Troyanskaya, Edward M Marcotte, Dong Xu, Timothy R Hughes and Frederick P Roth. A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biology 9:S2, 2008.
28. Lin Wan, Wenjiang J. Fu, Minghua Deng and Minping Qian. A Method to Correct Systematic Bias in Affymetrix SNP Arrays. Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, BMEI 2008, May 28-30, 2008, Sanya, Hainan, China - Volume 1, 442-446.
29. Wenjiang J. Fu, Ming Li, Lin Wan, Minghua Deng, Minping Qian. On Design of Oligonucleotide SNP Arrays and Methods for Genotype Calling. Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, BMEI 2008, May 28-30, 2008, Sanya, Hainan, China - Volume 1, 453-458.
39.Fugui Wang, Lin Hou, Jiangfeng Xu, Minping Qian, Minghua Deng. A robust empirical Bayesian method for detecting differentially expressed genes. Proceedings of the 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009, Oct 17-19, 2009, Tianjin, China - Volume 4, 1824-1828.
38.Wei Wei, Lin Wan, Minping Qian, Minghua Deng. The Implementation and Application of the Microarray Preprocessing Generalized PDNN Model. Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, BMEI 2009, Oct 17-19, 2009, Tianjin, China - Volume 3, 1536-1540, 2009.
30. Lin Wan, Dayong Li, Donglei Zhang, Xue Liu, Wenjiang J. Fu, Lihuang Zhu, Minghua Deng, Fengzhu Sun and Minping Qian. Conservation and Implications of Eukaryote Transcriptional Regulatory Regions across Multiple Species. BMC Genomics 9:623, 2008.
31. Hao Zheng, Xingyi Hang, Ji Zhu, Minping Qian, Wubin Qu, Chenggang Zhang, Minghua Deng. REMAS: a new regression model to identify alternative splicing events from exon array data. BMC Bioinformatics 10 (Suppl 1):S18, 2009. APBC2009 Best Paper Award.
32. Quan Wang, Lin Wan, Dayong Li, Lihuang Zhu, Minping Qian, Minghua Deng. Searching for bidirectional promoters in Arabidopsis thaliana. BMC Bioinformatics 10 (Suppl 1): S29, 2009.
33. Shaojin Duan, Lin Wan, Wenjiang J. Fu, Hong Pan, Qi Ding, Chang Chen, Peiwei Han, Xiaoyan Zhu, Liying Du, Hongxiao Liu, Yuxia Chen, Ximing Liu, Xiting Yan, Minghua Deng and Minping Qian. Nonlinear cooperation of p53-ING1-induced bax expression and protein S-nitrosylation in GSNO-induced thymocyte apoptosis: A quantitative approach with cross-platform validation. Apoptosis 14(2):236-245, 2009.
34. 韩放, 吴晶辰, 徐江峰, 邓明华. 利用PLS-VIP方法筛选差异表达基因. 大阳城2138学报 45(1):1-5, 2009.
35. 侯琳, 钱敏平, 朱云平, 邓明华. 转录因子结合位点生物信息学研究进展. 遗传 31(4): 365-373, 2009.
37.Hao Zheng, Fugui Wang, Jiangfeng Xu, Nengfeng Zhou, Minping Qian, Ji Zhu and Minghua Deng. Pathway Detection Based on Hierarchical LASSO Regression Model. Proceedings of the 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009, Oct 17-19, 2009, Tianjin, China - Volume 4, 1893-1899, 2009.
36. Hang, X., Li, P., Li, Z., Qu, W., Yu, Y., Li, H., Shen, Z., Zheng, H., Gao, Y.,Wu, Y.,Deng, M., Sun, Z., Zhang, C.Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array. BMC Genomics 10:126,2009.
